National Geographic: Hundreds of elephants mysteriously died. We may finally know why

A massive die-off of the endangered species has been happening in sub-Saharan
Africa since 2020. Until now, the culprit was unknown.

BY JEFFREY BARBEE AND LAUREL NEME

PUBLISHED Dec. 5, 2023--
When hundreds of African savanna elephants dropped dead in Botswana's Okavango Delta in 2020, conservationists were alarmed. As the death toll rose—from dozens in March to more than 350 animals by July—their concerns increased, especially because nobody knew what was happening.
A short time later, the mystery deepened when 34 more individuals of the endangered species died across the border in northwestern Zimbabwe in a three-week period, with one more found in November.
"It was very quick," says Chris Foggin, a veterinarian with Victoria Falls Wildlife Trust who examined the elephant carcasses in Zimbabwe. "That was what was so dramatic."
African savanna elephants in the five-country Kavango-Zambezi Transfrontier Conservation Area, or KAZA, represent the majority of what's left of that species, notes Steve Osofsky, director of the Cornell Wildlife
Health Center in Ithaca, New York. Around 350,000 African savanna elephants remain, and given the already significant set of threats to their survival, "a new disease could be what tips that last domino towards
extinction," says Osofsky, who wasn’t involved in the new research.
In September 2020, the Botswana government attributed the deaths of elephants in the Okavango Delta to cyanobacteria in the water that elephants drank, although without data to support it, scientists have questioned this conclusion. Meanwhile, the Zimbabwe carcasses showed no evidence they died from those toxic algae.
And so, the cause of the die-offs continued to elude experts. They ruled out poaching because the tusks were intact, and they found no bullet wounds. Poisoning was unlikely because no other animals, such as vultures feeding on the carcasses, were affected. (Read about the search for answers in
Botswana’s elephant deaths.)
Now, new research published recently in Nature Communications points to a different culprit, at least for the Zimbabwe elephants—a bacterium not previously found in elephants of any species, called Bisgaard taxon 45, that causes a massive systemic blood infection called septicemia.
Bisgaard taxon 45 is related to another bacterium, called Pasteurella multocida, that can cause septicemia in cattle and was linked to the death of 200,000 endangered saiga antelope in Kazakhstan in 2015. Yet while it
shares many of the same lethal genes, Bisgaard taxon 45 is a separate species.
"It's a disease we know can kill a reasonable number of elephants in a short space of time," says Foggin, co-leader of the study. And "it has the potential to kill a lot more given the right circumstances."
What those are, however, remains unknown—yet it’s pressing to find out. Aerial population surveys in KAZA in 2022 found a high number of new elephant carcasses.

Namibia operations at a standstill

Leon Swanepoel is the manager at the Ngandu Hotel, in Rundu, where many of ReconAfrica’s foreign staff have lived since mid-2021. When asked on June 12 if he believed that the staff had left, he said that a senior ReconAfrica employee told him that they were headed for new oil exploration work in Zimbabwe. Asked if he thought the company’s staff had abandoned ReconAfrica’s drilling camps in Namibia, Swanepoel said, “Yes they did.” He added that although he hoped ReconAfrica would find oil in Namibia, he didn’t "understand why it took them so long to decide whether it's worth drilling or not.”

Janine Treader, of ReconAfrica, shared a June 8 statement on behalf of the company’s media relations team answering National Geographic’s questions. It said that the company has paused drilling in Namibia while new aerial and seismic surveys are being examined. It also said that ReconAfrica remains committed to the search for oil at “the invitation of the governments of Namibia and Botswana and looks forward to the future of our exploration.” The statement continued, “We plan to be drilling again later this year when additional local and foreign workers will once again be required."

ReconAfrica faces class action lawsuits in the United States and Canada and awaits a decision from Namibia’s Ministry of Environment, Forests and Tourism that will determine whether the company’s drilling permit will be revoked. In addition, ReconAfrica’s March 1, 2023, filing to Canadian securities regulatory authorities noted “the existence of material uncertainties that may cast significant doubt” on whether it can continue as a “going concern.” In other words, as of the date of that filing, the company noted that its revenues weren’t sufficient to finance ongoing operations.

In a June 15 advertisement in Namibia's New Era newspaper, ReconAfrica said it is analyzing the information it has collected so far and that "field operational activities will recommence once we begin our next drilling campaign."

The Ministry of Environment, Forestry and Tourism did not respond to National Geographic’s questions.

Meanwhile, Muyemburuko (and many other) opponents of ReconAfrica’s operations in this parched region—where toxic pollutants from oil drilling can pose a real danger to scarce water supplies for both people and wildlife —hope that the company will decide not to restart work in Namibia. "It's long past time that they left,” Muyemburuko said.

Search For Answers

Finding Bisgaard taxon 45 was no easy task. Scientists examined as many elephant carcasses as they could, first collecting only blood smears because of the possibility of anthrax, a highly communicable bacteria, and then conducting full postmortems on five elephants that had recently died.

The examination revealed the elephants had enlarged livers and spleens, as well as internal bleeding in multiple organs—signs of septicemia. While P. multocida was suspected, anomalies in the testing of blood and tissue samples prompted scientists to do additional genetic analysis, leading to the discovery of the different bacteria.

"Doing a postmortem exam on an elephant is tough under any circumstances. But when they're in remote areas, where access is difficult, temperatures are high—it really is heroic work to get the types of diagnostic
samples that yield these types of data," Osofsky says.

Scientists don't know how widespread Bisgaard taxon 45 is, or if the bacteria exist as normal flora within elephants and other animals. People bit by captive lions and tigers in the U.S. and U.K. have contracted the
bacteria. Scientists have also recorded it in a pet chipmunk in Germany and in healthy captive parrots. (Learn how captive elephants can spread tuberculosis to people.)

"We're assuming it's probably present more frequently than we've known, without causing disease, but we don't have proof of that," Foggin says. Bacteria often only turn deadly when "something special happens," like the host has a weakened immune system, or it gets into the bloodstream through a wound, explains microbiologist Arnoud van Vliet, a study coauthor and senior lecturer at the University of Surrey's School of Veterinary Medicine in the U.K.

It's possible environmental stressors, such as heat and lack of food and water, may have led Bisgaard taxon 45 to proliferate and cause the septicemia in the Zimbabwe elephants, says Foggin.

What's Next

With much of Africa predicted to get hotter and drier, the bacterium “could because much worse mortalities down the line," says Foggin. That's why, he says, "it is important to keep monitoring elephant deaths and see if it's responsible."

But understanding where Bisgaard taxon 45 occurs and what triggers it will be tricky. If more incidents occur, scientists can look for trends in environmental conditions and other factors, says study co-leader Laura Rosen, an epidemiologist for the KAZA Animal Health Sub Working Group, which brings livestock and wildlife veterinarians together to manage transboundary animal disease. They can also look to its relative, P.
multocida, for clues (See National Geographic's elephant pictures.)

Yet many laboratories in the region aren’t equipped with enough resources to discern the differences between P. multocida and Bisgaard taxon 45, she says.

"It is not something anyone would've been looking for before," Rosen says. Meanwhile, Foggin has already started testing dead or anesthetized elephants on an opportunistic basis, as well as wild lions and other
carnivores, for the presence of Bisgaard taxon 45. And he hopes others will do the same.

"It's incumbent on all of us,” Osofsky adds, “to build on this study to try to fill in the gaps."

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